Udp-N-Acetylglucosamine-N-Acetylmuramyl- (Pentapeptide) Pyrophosphoryl-Undecaprenol N- Acetylglucosamine Transferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-57   ILE-58  13.8 14.0 6.3 -5.3 15.7 16.1 5.2
 ILE-58   ASP-59  12.9 13.4 -6.1 4.9 111.6 115.3 -2.8
 ASP-59   PHE-60  9.8 10.2 0.9 2.0 14.8 15.8 11.4
 PHE-60   ILE-61  9.4 10.1 1.0 23.2 52.4 50.8 92.2
 ILE-61   ARG-62  7.7 8.6 -37.0 6.8 143.5 129.0 -102.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-79   ARG-80  4.1 3.6 10.2 1.8 50.8 48.9 48.1
 ARG-80   ILE-81  4.0 4.3 -1.9 -0.6 120.9 121.5 -4.6
 ILE-81   PHE-82  7.5 7.6 0.8 0.4 45.2 49.0 10.2
 PHE-82   ASN-83  7.3 6.9 -4.5 -1.1 142.0 144.5 -20.9
 ASN-83   ALA-84  4.2 3.9 3.8 -1.0 53.1 54.2 7.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees