Vitamin B12 Transporter Btub

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-85   ASN-86  12.8 12.5 1.6 -10.9 77.3 51.4 33.2
 ASN-86   LEU-87  9.9 10.8 -150.6 76.9 80.3 94.0 -33.7
 LEU-87   ALA-88  9.9 11.8 -60.5 18.3 88.1 46.3 14.6
 ALA-88   GLY-89  6.6 9.6 -15.2 -2.4 137.9 109.3 28.2
 GLY-89   VAL-90  8.8 6.5 141.2 -24.8 111.0 75.9 0.9
 VAL-90   SER-91  10.7 6.4 -1.1 -3.3 39.1 43.5 12.3
 SER-91   GLY-92  13.3 8.6 -16.1 8.8 36.7 29.2 18.0
 GLY-92   SER-93  10.9 6.3 179.0 -94.2 105.7 137.6 -118.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-392   TYR-393  4.1 3.9 3.3 -1.9 62.0 60.4 25.1
 TYR-393   LYS-394  1.6 1.5 -5.6 6.9 148.0 148.2 13.5
 LYS-394   ALA-395  1.9 1.5 4.0 21.7 58.1 53.1 53.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-412   GLU-413  4.3 4.3 3.8 20.4 31.6 38.9 51.8
 GLU-413   LYS-414  4.0 3.9 7.6 2.7 52.3 51.8 50.9
 LYS-414   SER-415  2.0 2.1 -0.3 -1.0 143.5 134.5 -17.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-440   SER-441  5.7 5.5 4.0 -41.3 82.1 81.7 0.1
 SER-441   ASP-442  6.7 6.6 31.7 4.0 14.1 21.5 101.5
 ASP-442   LEU-443  8.7 8.2 -10.3 -6.3 113.5 136.0 -44.3
 LEU-443   ILE-444  8.7 8.8 0.7 19.6 38.6 41.7 68.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-454   ASN-455  14.5 13.7 -6.0 20.7 141.0 133.1 10.2
 ASN-455   GLU-456  12.8 11.3 6.4 -91.3 34.7 39.6 -202.9
 GLU-456   GLY-457  13.9 12.9 -14.0 -168.8 136.9 127.1 543.2
 GLY-457   LYS-458  12.5 12.4 -54.4 -51.6 125.0 130.9 -197.0
 LYS-458   ALA-459  10.5 10.4 14.1 -9.4 73.7 77.6 0.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees