Lactoferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-138   THR-139  22.0 22.2 -1.8 28.9 117.4 121.3 187.0
 THR-139   GLU-140  19.5 20.0 25.5 -35.9 79.5 92.7 -119.3
 GLU-140   SER-141  16.0 16.1 -16.3 5.9 161.8 159.4 -89.4
 SER-141   LEU-142  15.6 15.5 64.1 -78.3 58.2 53.1 9.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-323   TYR-324  11.4 12.1 29.2 -33.9 53.4 56.1 55.3
 TYR-324   LEU-325  11.0 11.7 22.2 -14.4 32.4 36.0 80.8
 LEU-325   THR-326  8.0 8.9 40.9 -33.8 42.3 47.8 91.4
 THR-326   ALA-327  10.2 12.0 33.7 -30.6 62.6 69.1 126.2
 ALA-327   LEU-328  12.9 13.7 -23.1 15.4 132.2 137.5 -79.1
 LEU-328   LYS-329  11.3 11.5 19.3 -31.2 147.3 145.7 107.3
 LEU-328   LYS-329  11.3 11.5 19.3 -31.2 147.3 145.7 107.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-328   LYS-329  11.3 11.5 19.3 -31.2 147.3 145.7 107.3
 LEU-328   LYS-329  11.3 11.5 19.3 -31.2 147.3 145.7 107.3
 LYS-329   ASN-330  9.0 10.0 -16.4 42.8 50.7 54.0 -102.2
 ASN-330   LEU-331  12.3 13.4 -45.5 23.4 57.5 31.5 199.8
 LEU-331   ARG-332  13.5 14.7 -22.5 17.5 37.3 38.4 51.4
 ARG-332   GLU-333  10.6 11.8 28.4 -15.6 132.9 110.6 -215.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-335   GLU-336  15.4 17.5 4.9 -0.8 97.6 101.7 5.0
 GLU-336   GLU-337  14.8 17.1 11.5 -25.2 75.4 74.9 -26.0
 GLU-337   VAL-338  11.1 13.5 17.0 -0.4 15.8 7.9 168.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-343   ARG-344  17.5 18.8 48.9 -28.3 92.6 74.9 -149.1
 ARG-344   VAL-345  16.0 16.2 -9.2 -22.7 24.6 25.4 314.0
 VAL-345   VAL-346  16.0 15.4 35.5 -29.0 79.0 72.2 49.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-377   ASP-378  15.0 14.6 48.6 -46.3 63.7 40.2 -62.0
 ASP-378   ASP-379  12.1 12.2 19.9 -9.4 132.7 126.3 -3.2
 ASP-379   CYS-380  10.4 10.3 -16.6 3.4 59.9 68.4 175.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-381   ALA-382  10.1 10.5 28.8 -15.4 83.9 94.6 53.2
 ALA-382   LEU-383  6.5 6.9 -7.2 -1.3 151.0 149.1 -119.6
 LEU-383   VAL-384  6.7 6.8 16.1 3.6 92.4 89.4 59.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-681   GLU-682  7.7 7.1 30.6 -14.3 67.6 62.3 21.8
 GLU-682   ALA-683  5.6 5.3 -0.5 -56.5 52.4 68.2 337.0
 ALA-683   CYS-684  3.6 2.4 74.1 -39.3 85.6 113.8 -100.5
 CYS-684   ALA-685  3.6 3.5 2.2 -46.1 37.4 47.1 -456.4
 ALA-685   PHE-686  2.5 3.4 83.6 -77.5 103.2 78.3 129.4
 PHE-686   LEU-687  1.2 2.0 7.4 -18.1 130.0 135.7 183.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees