Mucosal Addressin Cell Adhesion Molecule-1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-35   VAL-36  8.6 8.2 10.7 -6.4 52.8 56.4 2.0
 VAL-36   GLN-37  5.6 5.2 -7.2 14.5 148.3 144.6 23.9
 GLN-37   TRP-38  5.6 5.4 -4.0 0.7 129.8 123.0 -29.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-54   SER-55  2.6 1.4 -132.7 4.9 35.2 47.3 188.2
 SER-55   VAL-56  3.7 3.3 16.8 -13.4 122.2 120.8 2.9
 VAL-56   LEU-57  5.6 5.6 -9.0 7.5 22.9 25.1 5.6
 LEU-57   THR-58  6.0 6.1 5.1 -9.2 101.9 99.3 1.1
 THR-58   VAL-59  9.6 9.8 2.0 -5.0 161.0 155.3 10.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees