Pectate Lyase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-333   ASP-334  0.7 0.4 -1.0 -3.9 66.0 68.5 -47.3
 ASP-334   GLY-335  2.3 2.6 -1.9 6.3 107.6 107.8 50.0
 GLY-335   ASN-336  5.7 5.8 -9.4 12.8 162.9 161.1 9.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-424   ASN-425  9.8 9.8 -0.6 1.9 7.2 8.3 -13.5
 ASN-425   SER-426  10.6 10.7 -6.4 7.8 63.1 65.5 -1.5
 SER-426   GLN-427  7.0 7.1 -6.9 5.5 94.1 92.7 -9.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-433   PRO-434  1.6 1.5 -1.1 1.6 122.9 123.5 -5.6
 PRO-434   GLN-435  1.8 2.0 -0.9 -8.5 65.9 64.6 19.9
 GLN-435   PHE-436  5.3 5.5 2.5 5.3 74.0 69.8 30.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-438   LEU-439  8.4 8.7 -3.1 3.1 73.6 72.8 -12.5
 LEU-439   LYS-440  5.2 5.4 3.9 -9.1 133.6 136.1 65.1
 LYS-440   GLY-441  6.8 6.9 1.9 -0.6 126.0 127.3 -18.0
 GLY-441   GLY-442  4.6 4.7 -1.4 -1.1 115.6 115.8 20.9
 GLY-442   TYR-443  6.6 6.7 -5.7 10.6 160.4 163.7 60.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-456   ALA-457  3.2 3.4 1.7 -3.3 69.4 69.7 20.5
 ALA-457   LEU-458  4.0 4.1 -1.1 -1.0 67.9 65.7 -15.0
 LEU-458   THR-459  3.2 3.1 1.1 -1.5 167.1 169.6 0.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-486   ALA-487  13.3 13.2 0.9 2.7 114.8 115.0 -53.2
 ALA-487   VAL-488  9.9 9.7 -3.8 1.0 123.6 119.7 73.4
 VAL-488   THR-489  8.2 7.9 1.6 1.1 94.5 95.2 -33.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees