Tetracycline Repressor Class D

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-60   ALA-61  7.9 8.1 6.2 -3.0 119.4 129.5 -14.1
 ALA-61   ARG-62  10.7 10.6 -25.7 29.9 113.1 108.4 109.6
 ARG-62   HIS-63  11.0 11.0 3.8 -3.4 87.4 85.0 18.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-87   ARG-88  2.2 2.0 -13.0 22.4 56.5 59.6 -106.9
 ARG-88   ALA-89  2.1 2.5 -1.4 -9.1 84.4 79.0 43.7
 ALA-89   LEU-90  3.6 3.3 -6.0 1.8 36.4 38.6 97.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-98   VAL-99  10.4 10.2 0.7 -5.8 114.7 111.6 49.9
 VAL-99   HIS-100  11.4 11.2 5.9 -3.5 159.6 162.6 -49.3
 HIS-100   LEU-101  10.9 10.7 -10.2 -8.9 86.4 85.0 28.8
 LEU-101   GLY-102  13.2 12.7 -176.9 -156.3 72.1 94.1 -166.1
 GLY-102   THR-103  16.5 15.6 12.6 -38.0 126.3 129.8 200.8
 THR-103   ARG-104  15.8 16.0 -36.1 62.8 20.5 28.0 -346.9
 ARG-104   PRO-105  16.2 18.0 -33.0 19.1 65.7 48.3 82.1
 PRO-105   ASP-106  14.7 15.7 -18.6 8.1 90.6 63.5 28.3
 ASP-106   GLU-107  16.6 16.6 6.2 -12.1 160.4 168.7 9.0
 GLU-107   LYS-108  18.3 16.9 7.8 13.2 100.5 105.2 -160.9
 LYS-108   GLN-109  16.6 14.1 -28.0 40.3 72.9 83.9 -52.9
 GLN-109   TYR-110  13.2 12.0 -24.6 -19.8 32.2 33.9 544.3
 TYR-110   ASP-111  14.4 14.0 -4.7 0.5 41.5 33.9 59.8
 ASP-111   THR-112  12.4 12.6 8.5 1.1 77.6 83.7 0.0
 THR-112   VAL-113  9.2 9.2 -4.3 18.5 89.6 77.0 -153.9
 VAL-113   GLU-114  9.7 9.9 -20.5 13.8 31.2 11.2 9.7
 GLU-114   THR-115  11.1 11.1 -8.6 -1.0 57.6 59.9 102.3
 THR-115   GLN-116  7.7 7.8 -11.0 4.8 108.3 98.4 1.0
 GLN-116   LEU-117  6.5 6.2 2.3 6.3 114.0 118.7 -115.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees