Superoxide Dismutase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-405   ILE-406  6.4 6.3 -2.7 -3.5 37.1 38.4 85.2
 ILE-406   SER-407  3.8 3.6 1.6 -4.1 115.8 115.3 77.7
 SER-407   LEU-408  2.5 2.2 2.6 -4.1 86.9 85.4 55.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-432   LYS-433  4.1 3.9 -1.9 2.1 108.8 107.6 6.8
 LYS-433   THR-434  7.6 7.4 -2.7 5.7 39.9 39.3 -33.9
 THR-434   TYR-435  8.8 8.7 -3.1 0.5 78.2 78.7 56.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-473   HIS-474  6.9 7.1 0.2 -3.2 120.8 124.3 42.1
 HIS-474   ASN-475  3.5 3.8 -2.6 3.8 9.1 11.5 -14.4
 ASN-475   LEU-476  4.7 5.1 -0.9 -5.9 76.8 74.7 6.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees