3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-200   ALA-201  2.8 2.2 2.7 -3.9 23.1 21.7 -12.7
 ALA-201   LYS-202  2.0 1.6 -44.5 8.8 84.5 92.0 2.2
 LYS-202   VAL-203  3.9 3.7 25.8 -13.8 106.8 136.0 -4.4
 VAL-203   LEU-204  6.0 4.8 -26.2 4.8 132.8 103.0 -55.9
 LEU-204   GLY-205  7.1 6.3 43.0 -2.6 35.0 16.9 171.3
 GLY-205   ASN-206  6.9 7.2 35.8 12.1 98.0 102.4 -34.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-215   GLY-216  14.5 14.1 2.9 -14.6 32.3 35.7 -37.1
 GLY-216   GLY-217  15.3 15.2 0.5 -15.7 96.4 88.6 -2.3
 GLY-217   ALA-218  16.4 15.5 29.2 -40.5 68.7 89.9 -3.9
 ALA-218   LYS-219  19.9 18.9 -120.8 -166.1 57.7 17.2 -226.7
 LYS-219   VAL-220  22.0 20.6 -107.6 24.1 39.4 63.0 254.0
 VAL-220   SER-221  22.4 22.0 -19.5 5.2 34.2 28.7 34.3
 SER-221   ASP-222  23.8 24.5 -2.1 -15.3 69.9 33.5 46.9
 ASP-222   LYS-223  20.6 22.0 -34.2 51.7 64.0 83.5 -9.8
 LYS-223   ILE-224  18.6 19.0 -38.7 -3.5 40.0 74.9 73.0
 ILE-224   GLN-225  21.0 21.6 10.9 -6.2 148.3 169.5 -16.0
 GLN-225   LEU-226  18.9 22.1 19.4 -28.8 85.0 121.5 28.3
 LEU-226   LEU-227  15.9 18.5 33.9 -3.7 100.6 87.4 5.5
 LEU-227   ASP-228  18.2 19.0 -2.2 0.2 15.7 38.0 10.3
 ASP-228   ASN-229  19.3 21.3 -3.9 7.7 59.4 44.4 -5.0
 ASN-229   MET-230  15.8 18.5 45.8 -36.0 70.4 77.1 -31.2
 MET-230   LEU-231  14.9 16.2 23.4 -14.6 85.5 79.8 -31.4
 LEU-231   GLN-232  18.4 18.9 12.6 8.2 128.7 132.6 -45.0
 GLN-232   ARG-233  18.2 18.1 -29.1 26.3 91.8 100.1 16.0
 ARG-233   ILE-234  15.1 14.8 -31.1 23.5 145.7 145.2 -27.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-390   MET-391  7.4 6.1 0.3 3.1 138.8 141.0 2.4
 MET-391   SER-392  4.8 3.8 -10.9 15.9 26.2 30.0 -27.4
 SER-392   HIS-393  5.2 4.9 -4.7 -0.4 78.3 71.7 1.5
 HIS-393   VAL-394  1.9 1.8 -6.7 17.7 126.6 116.0 24.6
 VAL-394   SER-395  2.0 2.3 6.1 -20.2 115.5 127.9 39.8
 SER-395   THR-396  5.0 5.0 9.1 7.4 51.7 64.2 40.3
 THR-396   GLY-397  8.5 8.7 7.7 30.5 102.2 105.1 -40.8
 GLY-397   GLY-398  10.4 9.5 27.4 -20.5 90.2 53.2 -5.1
 GLY-398   GLY-399  11.2 11.5 -35.6 -20.9 38.8 54.4 181.0
 GLY-399   ALA-400  14.0 13.5 50.4 -14.7 153.2 158.5 -147.6
 ALA-400   SER-401  12.1 11.5 31.3 -23.0 101.9 98.6 -40.2
 SER-401   LEU-402  9.0 9.1 0.7 -7.8 102.3 104.1 -12.3
 LEU-402   GLU-403  11.8 12.5 -24.3 7.2 19.6 22.2 59.1
 GLU-403   LEU-404  13.2 14.2 5.2 6.8 132.7 137.9 -13.6
 LEU-404   LEU-405  9.8 10.8 6.2 20.5 90.9 108.7 -8.9
 LEU-405   GLU-406  10.4 11.6 -16.0 8.3 66.6 35.0 29.9
 GLU-406   GLY-407  13.9 14.2 39.1 -51.6 173.8 147.0 34.2
 GLY-407   LYS-408  12.3 11.2 -1.7 26.4 66.1 58.0 -29.2
 LYS-408   THR-409  13.3 12.8 -29.9 45.3 83.6 85.5 -21.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees