Farnesyl Pyrophosphate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-12   GLU-13  6.6 6.2 -3.9 1.5 53.4 56.9 37.3
 GLU-13   VAL-14  8.4 8.1 -1.4 3.5 29.0 31.2 43.5
 VAL-14   GLN-15  7.5 7.2 -2.2 -0.5 92.8 97.5 -25.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-43   CYS-44  12.7 12.8 -6.6 3.9 95.8 94.1 8.1
 CYS-44   LEU-45  8.9 9.0 4.4 -7.6 140.3 142.5 -26.9
 LEU-45   GLY-46  8.5 8.7 7.2 -8.8 111.9 111.8 193.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-86   ILE-87  1.6 1.7 3.4 -3.3 96.7 99.2 -33.3
 ILE-87   GLU-88  4.6 4.9 -3.8 3.3 128.8 129.5 31.6
 GLU-88   PHE-89  5.9 6.2 -0.7 -4.0 74.3 73.9 11.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-133   TRP-134  9.8 9.7 7.0 -7.9 127.7 130.2 -27.6
 TRP-134   THR-135  8.6 8.6 4.6 5.2 81.2 81.9 108.1
 THR-135   GLN-136  4.9 5.0 -4.1 -2.9 134.4 130.4 0.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees