Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-86   PRO-87  4.2 4.2 -14.1 7.3 94.4 84.0 6.1
 PRO-87   GLU-88  0.5 1.1 63.9 -7.1 35.3 34.1 132.8
 GLU-88   ILE-89  3.4 4.0 -16.3 18.0 83.1 90.8 -25.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-174   ARG-175  14.2 14.6 -2.0 -7.9 36.3 50.5 9.8
 ARG-175   GLY-176  12.6 12.4 25.8 -31.7 76.4 75.6 -15.6
 GLY-176   VAL-177  8.8 8.6 9.0 -5.1 118.7 133.0 4.3
 VAL-177   ASN-178  7.8 7.6 19.8 -6.2 94.0 96.5 15.5
 ASN-178   LEU-179  5.0 5.3 26.2 -14.7 107.0 107.1 1.0
 LEU-179   PRO-180  6.5 7.2 -7.6 -2.3 74.0 57.1 -30.2
 PRO-180   GLY-181  5.5 6.5 -168.0 -168.3 89.1 89.0 24.2
 GLY-181   CYS-182  8.7 10.2 20.3 -37.0 40.8 23.0 4.9
 CYS-182   ASP-183  9.7 10.2 -7.5 7.0 140.7 129.1 10.0
 ASP-183   VAL-184  9.9 10.5 -0.2 8.9 133.0 142.3 26.1
 VAL-184   ASP-185  7.7 8.0 6.7 -24.9 33.6 32.6 -44.5
 ASP-185   LEU-186  8.0 8.9 -62.7 69.8 123.8 142.9 24.7
 LEU-186   PRO-187  4.5 5.7 21.0 -2.0 62.8 60.2 0.4
 PRO-187   ALA-188  3.8 4.8 12.1 -9.6 110.7 113.1 -11.3
 ALA-188   VAL-189  5.1 5.5 -8.9 7.3 113.1 102.1 28.9
 VAL-189   SER-190  4.0 4.0 29.7 -11.0 54.3 61.1 28.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees