Capsid Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-2033   ASP-2034  16.4 16.5 10.4 -10.9 55.1 52.7 -48.6
 ASP-2034   PRO-2035  17.5 18.0 -8.6 12.7 112.6 117.8 1.4
 PRO-2035   VAL-2036  15.8 16.3 -13.0 11.0 150.4 142.6 -10.0
 VAL-2036   ALA-2037  13.4 13.7 -9.9 10.2 129.4 135.6 23.7
 ALA-2037   GLY-2038  13.4 13.6 3.6 -4.8 80.7 81.3 -4.8
 GLY-2038   SER-2039  11.0 11.2 -1.5 6.0 165.0 162.4 38.0
 SER-2039   SER-2040  10.4 10.3 4.2 -9.0 44.8 49.0 -38.5
 SER-2040   THR-2041  13.1 13.0 9.2 -13.9 59.1 69.6 -32.4
 THR-2041   ALA-2042  11.1 11.1 4.4 -15.3 41.5 43.7 -54.1
 ALA-2042   VAL-2043  8.0 7.8 49.9 -38.1 38.8 41.0 72.9
 VAL-2043   ALA-2044  10.3 9.6 -5.9 -3.5 160.6 155.3 -66.1
 ALA-2044   THR-2045  10.2 9.4 37.6 -15.0 67.8 85.2 72.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-2070   SER-2071  4.7 4.5 -3.8 0.5 153.2 154.3 -0.4
 SER-2071   PRO-2072  6.2 6.1 -0.5 5.4 121.2 118.5 20.1
 PRO-2072   ASN-2073  6.1 6.1 -2.1 6.9 78.6 74.0 -19.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-2084   LEU-2085  3.0 2.6 -2.0 3.1 127.8 129.3 17.9
 LEU-2085   GLY-2086  0.9 1.1 7.7 -3.8 41.1 39.4 37.7
 GLY-2086   PRO-2087  2.1 1.9 -5.1 -0.7 81.6 83.6 26.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-2109   ARG-2110  7.5 7.9 4.4 -2.7 29.1 33.5 48.4
 ARG-2110   ILE-2111  9.0 9.5 14.1 -19.9 48.5 48.9 0.5
 ILE-2111   MET-2112  6.9 7.7 4.7 -14.4 38.1 32.8 -87.9
 MET-2112   LEU-2113  8.9 9.3 11.8 10.3 30.9 43.8 165.6
 LEU-2113   ALA-2114  8.1 8.1 -41.0 91.6 126.6 133.5 397.7
 ALA-2114   GLY-2115  10.3 10.3 33.5 -35.9 32.0 29.5 -15.4
 GLY-2115   ASN-2116  8.5 8.5 14.3 -62.4 36.2 37.3 -398.7
 ASN-2116   ALA-2117  9.8 9.5 34.6 -30.9 72.5 65.9 -53.9
 ALA-2117   PHE-2118  10.3 9.6 4.7 -5.8 54.1 60.1 -18.8
 PHE-2118   THR-2119  7.3 6.4 1.4 -6.8 118.3 128.4 -8.8
 THR-2119   ALA-2120  4.7 4.5 -41.6 30.9 73.8 76.1 40.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-2121   LYS-2122  3.8 4.2 12.4 -3.1 30.9 37.6 85.4
 LYS-2122   ILE-2123  5.5 6.0 -5.5 -3.0 136.9 140.2 -80.4
 ILE-2123   ILE-2124  4.5 4.8 -12.0 15.2 129.2 134.1 91.6
 ILE-2124   VAL-2125  6.8 6.9 -0.8 -2.5 24.7 28.6 75.6
 ILE-2124   VAL-2125  6.8 6.9 -0.8 -2.5 24.7 28.6 75.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-2124   VAL-2125  6.8 6.9 -0.8 -2.5 24.7 28.6 75.6
 ILE-2124   VAL-2125  6.8 6.9 -0.8 -2.5 24.7 28.6 75.6
 VAL-2125   SER-2126  6.1 6.0 -10.0 6.4 56.0 53.1 -2.4
 SER-2126   CYS-2127  8.5 8.2 0.8 0.6 161.4 161.9 -12.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-2155   ASP-2156  13.7 14.0 37.1 -18.8 3.6 9.7 183.4
 ASP-2156   PRO-2157  14.5 14.6 25.6 -22.7 61.9 57.3 -21.4
 PRO-2157   ILE-2158  11.7 12.3 27.4 -35.3 64.4 75.5 -21.7
 ILE-2158   GLU-2159  10.4 10.8 3.9 -7.4 8.7 3.8 -26.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-2171   ASN-2172  2.4 2.4 -9.5 13.1 58.5 61.6 -23.0
 ASN-2172   ASN-2173  3.2 3.0 -5.1 22.2 136.0 137.6 150.6
 ASN-2173   ASP-2174  6.0 5.5 35.9 -35.9 90.4 81.2 56.7
 ASP-2174   ARG-2175  8.6 7.4 -66.0 4.9 147.9 161.1 -563.1
 ARG-2175   ASN-2176  10.7 7.9 19.6 -22.7 96.3 78.3 68.8
 ASN-2176   GLN-2177  10.7 10.2 -0.8 20.6 115.0 83.5 71.0
 GLN-2177   GLN-2178  7.7 7.8 10.8 29.1 12.2 25.9 324.1
 GLN-2178   THR-2179  8.2 8.4 -5.6 -9.5 101.8 91.5 -26.2
 THR-2179   MET-2180  5.6 5.7 -5.1 9.3 155.4 158.0 29.1
 MET-2180   ARG-2181  6.3 6.3 -7.8 -2.2 135.9 133.0 -66.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-2200   VAL-2201  9.7 9.9 6.8 7.3 52.0 43.4 179.6
 VAL-2201   VAL-2202  8.0 8.4 -5.4 -1.5 120.6 112.3 9.1
 VAL-2202   ALA-2203  6.8 6.9 0.5 7.0 24.8 20.9 46.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees