Abc Transporter, Substrate Binding Protein (Amino Acid)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-123   GLN-124  13.0 13.1 1.6 -0.8 62.3 63.6 18.0
 GLN-124   GLY-125  10.6 10.7 -0.2 -0.8 108.2 106.2 60.8
 GLY-125   GLY-126  10.0 10.0 3.5 -4.4 138.6 139.4 -60.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-130   TYR-131  6.4 6.2 2.9 -5.6 97.0 97.4 42.2
 TYR-131   LEU-132  2.9 2.7 1.4 0.7 127.5 128.3 -68.1
 LEU-132   ALA-133  4.9 4.8 -1.5 1.0 117.8 117.9 14.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-136   LYS-137  7.9 8.0 -2.4 -3.8 89.2 89.0 7.0
 LYS-137   ASP-138  10.6 10.6 6.3 -0.6 41.5 44.8 149.6
 ASP-138   ALA-139  13.1 13.2 -3.9 -2.5 159.7 161.7 -231.7
 ALA-139   LYS-140  10.7 11.0 4.2 -1.7 53.4 51.4 231.3
 LYS-140   VAL-141  11.1 11.2 0.4 -2.7 76.2 77.0 -92.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-219   ALA-220  10.2 10.2 12.6 -6.3 47.7 51.1 179.1
 ALA-220   LYS-221  7.0 7.0 10.5 -11.2 68.8 64.9 -65.9
 LYS-221   LEU-222  5.4 5.3 -3.0 0.5 84.3 84.2 13.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-227   ILE-228  12.4 12.5 0.7 -5.2 62.9 64.1 -186.2
 ILE-228   VAL-229  11.1 11.2 0.1 1.2 117.6 116.3 -22.1
 VAL-229   SER-230  13.7 13.8 3.9 -6.7 62.7 61.6 88.5
 SER-230   ASN-231  16.2 16.2 7.7 9.6 74.9 68.9 522.6
 ASN-231   GLU-232  17.3 17.5 -11.4 -9.0 169.0 159.6 -739.8
 GLU-232   LEU-233  16.8 16.5 6.4 -5.7 80.2 84.0 283.2
 LEU-233   ALA-234  13.1 12.8 -6.2 -2.0 101.1 101.5 75.1
 ALA-234   SER-235  14.6 14.3 0.0 5.4 21.1 24.7 203.2
 SER-235   ILE-236  16.2 16.2 5.1 -8.3 49.8 43.8 35.9
 ILE-236   ALA-237  13.0 13.0 -1.5 2.5 87.8 83.7 -243.0
 ALA-237   GLY-238  10.9 11.1 1.3 -3.7 80.7 85.9 4.0
 GLY-238   ASP-239  14.0 14.3 3.9 5.7 145.4 144.6 -352.8
 ASP-239   ALA-240  15.0 15.2 -1.8 -4.8 71.2 73.1 268.7
 ALA-240   VAL-241  11.6 11.7 0.7 -4.4 137.5 136.2 42.7
 ALA-240   VAL-241  11.6 11.7 0.7 -4.4 137.5 136.2 42.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-240   VAL-241  11.6 11.7 0.7 -4.4 137.5 136.2 42.7
 ALA-240   VAL-241  11.6 11.7 0.7 -4.4 137.5 136.2 42.7
 VAL-241   GLU-242  10.7 10.7 0.8 -1.8 153.3 154.9 73.0
 GLU-242   GLY-243  12.2 12.1 2.8 0.1 112.2 109.8 -164.1
 GLY-243   THR-244  9.7 9.6 -1.2 -0.7 92.7 93.4 26.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-332   TYR-333  5.8 5.8 -0.9 -0.9 98.2 98.3 38.5
 TYR-333   GLU-334  8.5 8.4 1.6 0.2 49.3 48.7 71.1
 GLU-334   TRP-335  9.1 9.0 -0.5 -0.1 121.5 122.1 114.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-344   TYR-345  15.8 15.5 -0.8 7.7 134.4 131.5 97.9
 TYR-345   ILE-346  13.2 12.8 -1.9 3.5 163.0 158.9 10.6
 ILE-346   GLN-347  13.3 13.2 -4.4 -2.3 122.8 125.4 -19.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees