Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-228   PHE-229  5.1 4.7 10.4 1.0 168.0 176.1 -24.9
 PHE-229   GLY-230  5.1 4.9 -15.8 39.1 65.7 71.2 -22.1
 GLY-230   PHE-231  4.5 3.7 -28.7 15.7 8.3 24.4 19.0
 PHE-231   SER-232  4.5 5.8 -20.0 -9.1 74.1 47.2 42.1
 SER-232   VAL-233  3.1 4.3 -42.9 0.4 74.6 68.4 58.5
 VAL-233   SER-234  6.5 7.4 -3.8 6.0 12.2 17.6 -5.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-284   VAL-285  4.7 4.7 -23.7 19.0 64.7 68.4 6.5
 VAL-285   LYS-286  2.5 1.8 -12.9 24.1 43.5 53.5 -6.4
 LYS-286   GLN-287  5.7 5.4 -26.6 -1.1 46.8 29.9 42.3
 GLN-287   VAL-288  5.7 5.7 -1.3 -0.9 40.5 49.9 11.1
 VAL-288   SER-289  2.4 2.1 8.7 -0.4 129.4 111.3 -6.3
 SER-289   LYS-290  4.8 4.2 -9.6 0.2 57.0 49.3 7.6
 LYS-290   SER-291  7.1 6.8 -0.1 22.2 39.0 31.8 -36.3
 SER-291   GLY-292  5.1 4.5 -31.6 -0.6 41.1 58.0 60.0
 GLY-292   LYS-293  3.8 4.5 35.0 -6.5 78.6 90.8 7.5
 LYS-293   THR-294  1.9 2.4 -10.8 24.0 139.1 143.6 11.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees