Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-70   GLU-71  1.4 1.0 1.0 12.5 111.0 112.9 16.4
 GLU-71   ILE-72  3.8 3.7 4.6 -21.6 164.2 157.8 185.0
 ILE-72   ARG-73  4.5 4.5 -12.5 -3.6 73.7 71.6 62.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-111   GLY-112  2.6 2.8 -4.9 22.4 90.8 86.2 -11.2
 GLY-112   PHE-113  5.4 5.6 -15.4 5.8 85.6 91.7 0.1
 PHE-113   THR-114  5.6 5.6 -13.0 12.3 120.0 124.7 83.2
 THR-114   THR-115  8.1 7.7 26.2 -29.0 65.0 74.4 -96.9
 THR-114   THR-115  8.1 7.7 26.2 -29.0 65.0 74.4 -96.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-114   THR-115  8.1 7.7 26.2 -29.0 65.0 74.4 -96.9
 THR-114   THR-115  8.1 7.7 26.2 -29.0 65.0 74.4 -96.9
 THR-115   ASP-116  9.7 9.9 -33.8 31.4 144.2 134.6 48.8
 ASP-116   LEU-117  10.2 10.4 40.1 -22.4 98.2 93.8 134.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-158   ASN-159  9.6 9.5 10.4 -12.1 136.8 138.1 -1.3
 ASN-159   LEU-160  10.9 10.6 8.5 -0.3 65.0 63.5 135.0
 LEU-160   PRO-161  11.2 11.2 -1.1 -5.6 56.9 45.0 112.7
 PRO-161   GLY-162  14.2 14.0 -13.1 12.2 101.0 96.3 -45.6
 GLY-162   VAL-163  14.8 15.1 -39.2 51.7 105.2 111.2 -304.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-165   ALA-166  7.4 7.5 21.7 -7.0 70.1 71.4 135.5
 ALA-166   LEU-167  7.6 7.9 12.1 -38.0 84.6 77.4 -138.0
 LEU-167   PRO-168  4.2 4.9 1.3 5.2 32.3 20.8 102.7
 PRO-168   ALA-169  5.6 6.0 -7.9 11.0 139.0 126.3 -92.8
 ALA-169   LEU-170  4.3 4.0 -5.0 -19.7 96.9 91.6 -108.6
 LEU-170   ALA-171  5.5 5.5 -18.5 -28.2 26.1 39.6 451.1
 ALA-171   GLU-172  5.9 7.0 -9.8 4.9 85.4 96.8 -215.1
 GLU-172   LYS-173  9.4 10.6 36.3 -13.3 46.8 83.4 125.6
 LYS-173   ASP-174  10.6 10.2 -6.8 -30.9 161.8 152.2 -474.3
 ASP-174   LYS-175  8.3 8.8 16.9 10.1 56.1 44.4 169.0
 LYS-175   GLN-176  10.7 10.5 5.6 7.7 68.4 65.9 102.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees