5'-Nucleotidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-327   ARG-328  11.8 12.3 -8.6 4.4 59.3 62.0 6.4
 ARG-328   ILE-329  9.3 10.0 -7.3 8.3 113.3 113.2 -1.0
 ILE-329   LYS-330  6.6 7.1 -2.2 3.8 61.3 61.6 -0.7
 LYS-330   LEU-331  6.6 6.3 6.2 -17.5 156.5 154.0 8.4
 LEU-331   ASP-332  5.8 5.8 26.2 8.1 86.1 87.8 6.0
 ASP-332   ASP-333  3.3 4.2 18.8 -29.1 78.8 104.2 19.2
 ASP-333   TYR-334  2.0 0.6 49.5 -26.0 147.3 168.4 -8.8
 TYR-334   SER-335  3.8 1.1 36.9 -60.0 129.2 102.9 -0.2
 SER-335   THR-336  0.6 4.5 23.6 44.3 87.1 55.8 13.0
 THR-336   GLN-337  3.5 5.0 -46.5 -30.5 93.1 60.9 34.7
 GLN-337   GLU-338  6.0 6.8 -13.2 -14.2 31.2 36.2 25.4
 GLU-338   LEU-339  8.8 9.1 -0.7 11.6 55.8 48.0 -3.9

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees