Mhc Class I H-2dd Heavy Chain

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-182   ASP-183  32.6 32.2 54.6 -30.1 28.8 23.8 408.6
 ASP-183   SER-184  32.2 32.1 -19.7 22.2 78.1 95.8 200.8
 SER-184   PRO-185  28.7 28.8 -21.3 -2.0 112.6 110.1 14.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-262   HIS-263  23.6 23.5 2.1 3.7 86.6 76.8 50.4
 HIS-263   GLN-264  26.0 25.9 -10.0 20.3 89.5 80.6 14.9
 GLN-264   GLY-265  26.3 26.1 8.0 -38.1 149.7 143.4 594.7
 GLY-265   LEU-266  27.1 26.7 42.4 -40.2 124.0 128.4 -137.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees