Transcriptional Regulator, Tetr Family

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-60   LYS-61  8.0 7.2 -3.2 -3.6 35.9 43.3 79.1
 LYS-61   LEU-62  8.8 8.5 3.7 3.1 111.7 117.0 -56.6
 LEU-62   GLN-63  5.2 5.0 -10.7 8.5 125.9 128.0 40.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-85   ILE-86  7.7 7.3 9.3 6.5 65.6 63.9 43.0
 ILE-86   GLU-87  6.1 6.1 -9.9 14.8 148.0 144.4 25.2
 GLU-87   LYS-88  5.8 5.6 -1.0 -12.9 77.7 74.7 -26.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-120   LEU-121  5.2 6.1 13.2 -33.5 144.7 136.2 111.3
 LEU-121   GLU-122  4.3 4.1 37.2 -2.2 76.8 79.3 116.3
 GLU-122   LYS-123  4.1 4.3 8.6 -9.1 69.0 82.0 31.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-159   GLY-160  12.7 9.5 9.7 -8.2 33.9 53.4 12.6
 GLY-160   PHE-161  14.8 12.3 13.7 -9.8 43.2 21.4 51.2
 PHE-161   GLU-162  11.9 10.6 -1.9 -3.1 81.5 92.7 4.8
 GLU-162   GLU-163  10.0 7.6 -0.4 -0.5 106.4 88.6 -51.6
 GLU-163   VAL-164  13.3 10.5 3.0 4.7 8.8 27.0 99.0
 VAL-164   TYR-165  13.2 12.1 -10.5 -19.9 108.5 132.6 -90.6
 TYR-165   LEU-166  9.6 9.2 20.6 -2.5 96.2 102.4 -56.0
 LEU-166   ARG-167  11.5 9.1 7.0 -11.1 51.8 77.2 28.1
 ARG-167   THR-168  14.6 12.9 -13.6 42.3 159.3 170.2 167.1
 THR-168   TYR-169  12.6 12.8 0.6 8.1 79.9 57.6 60.5
 TYR-169   GLN-170  9.6 10.5 21.3 11.7 120.6 111.3 -95.4
 GLN-170   GLY-171  11.2 12.5 -4.0 1.5 122.8 132.3 3.2
 GLY-171   LYS-172  12.5 13.6 -3.0 -3.0 167.2 160.1 -51.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees