Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-34   LEU-35  2.2 1.0 -0.4 0.5 63.5 61.4 6.7
 LEU-35   ARG-36  2.3 3.2 13.3 -10.8 46.9 51.5 -4.2
 ARG-36   ALA-37  4.2 5.5 -11.5 29.8 119.1 124.2 17.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-59   THR-60  3.9 3.8 23.4 13.6 47.7 53.2 74.8
 THR-60   ASP-61  1.5 1.2 -8.0 -5.7 70.3 73.3 17.9
 ASP-61   GLU-62  2.4 2.8 -3.3 -0.8 85.0 78.1 9.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees