Atp-Dependent RNA Helicase Dob1
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-89
SER-90
22.3
23.2
3.4
-10.2
154.0
161.9
77.9
SER-90
ARG-91
21.9
23.4
-6.0
-13.7
62.6
52.9
134.1
ARG-91
GLU-92
21.5
23.0
1.5
4.7
173.1
156.6
-18.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-120
HIS-121
17.7
18.6
-7.1
9.3
33.9
38.9
-10.6
HIS-121
GLN-122
18.3
19.4
3.3
-15.4
139.7
145.3
14.0
GLN-122
VAL-123
18.4
18.9
-15.6
-2.9
42.2
44.4
72.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-170
ALA-171
11.0
11.4
-24.3
5.3
24.9
15.5
167.1
ALA-171
HIS-172
11.6
11.7
-5.7
8.9
61.9
56.8
2.0
HIS-172
THR-173
10.1
10.0
6.5
6.6
90.5
93.8
-44.9
THR-173
SER-174
11.9
11.2
-94.0
-16.7
37.9
59.5
571.5
SER-174
ALA-175
14.7
13.6
-0.8
-105.5
119.4
107.7
-1009.6
ALA-175
GLY-176
16.3
15.3
-79.7
-161.0
94.5
105.0
-91.4
GLY-176
LYS-177
18.1
18.0
62.2
-17.0
12.8
5.9
493.4
LYS-177
THR-178
17.3
17.1
13.1
-16.3
71.8
70.9
33.3
THR-178
VAL-179
20.2
19.7
9.5
-8.7
76.0
80.6
3.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-317
TYR-318
15.8
16.6
-1.5
1.7
41.5
44.2
-17.3
TYR-318
THR-319
13.7
14.5
-0.8
-13.3
26.1
25.3
85.6
THR-319
ASN-320
14.1
14.8
6.0
-9.9
129.0
129.0
-39.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-505
SER-506
14.7
13.7
161.2
-4.8
153.6
100.3
-936.4
SER-506
ILE-507
17.1
10.5
-38.8
-127.3
38.6
29.9
1570.9
ILE-507
GLY-508
14.4
11.6
-95.3
101.2
76.6
94.6
-1008.1
GLY-508
LEU-509
14.8
15.2
-2.1
-2.3
128.6
109.3
8.9
LEU-509
ASN-510
16.9
16.4
-45.3
173.5
116.1
145.6
1154.6
ASN-510
MET-511
17.0
17.9
-90.0
0.7
159.2
134.0
-786.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-577
ARG-578
2.5
3.6
-2.6
-11.3
33.4
32.3
93.8
ARG-578
LEU-579
3.3
4.2
10.8
-13.1
116.6
113.1
-110.8
LEU-579
ASP-580
1.1
2.0
-27.5
27.7
38.7
27.8
51.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-581
ALA-582
2.7
2.0
-5.0
-5.6
80.2
80.7
45.6
ALA-582
PHE-583
6.3
5.7
9.7
4.1
30.1
37.2
158.5
PHE-583
HIS-584
6.7
6.3
-10.0
11.6
112.7
111.6
25.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-588
MET-589
18.5
18.3
-65.8
73.9
91.3
71.6
3.9
MET-589
ILE-590
15.0
14.7
-12.4
2.5
30.6
15.9
88.0
ILE-590
LEU-591
13.9
14.0
2.4
-7.9
136.6
130.3
31.5
LEU-591
ASN-592
16.8
17.2
24.4
-19.3
87.6
84.8
-44.0
LEU-591
ASN-592
16.8
17.2
24.4
-19.3
87.6
84.8
-44.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-591
ASN-592
16.8
17.2
24.4
-19.3
87.6
84.8
-44.0
LEU-591
ASN-592
16.8
17.2
24.4
-19.3
87.6
84.8
-44.0
ASN-592
LEU-593
16.5
16.8
-6.6
-5.3
109.5
122.7
-23.8
LEU-593
MET-594
12.9
13.4
13.5
-3.3
9.6
11.1
76.0
MET-594
ARG-595
14.0
14.5
10.0
-7.1
67.2
71.0
27.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-882
ARG-883
11.9
12.0
19.5
-11.9
34.7
38.7
65.2
ARG-883
ARG-884
13.5
14.0
4.0
5.6
100.3
103.4
2.5
ARG-884
ARG-885
16.9
17.3
-11.2
2.7
75.7
77.2
45.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-887
VAL-888
18.9
19.6
-8.3
12.1
113.7
115.6
87.2
VAL-888
LEU-889
21.2
21.7
-1.5
-1.5
71.3
71.8
34.2
LEU-889
ARG-890
20.3
20.8
0.2
-4.3
156.4
159.0
27.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-893
PHE-894
23.7
25.4
56.4
1.5
58.1
111.7
2.3
PHE-894
CYS-895
20.3
23.4
-170.0
-78.8
149.2
126.8
1134.6
CYS-895
THR-896
20.3
20.9
0.0
-15.1
94.5
143.8
-118.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees