Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  5.1 5.6 -17.3 5.9 54.4 57.7 37.4
 LEU-109   GLY-110  2.4 2.9 17.7 2.3 53.1 52.4 49.8
 GLY-110   ILE-111  3.2 3.3 -10.0 -6.0 55.7 51.7 38.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  7.5 7.5 -4.5 -5.0 43.8 38.6 38.4
 ASP-216   SER-217  4.9 4.8 -0.2 2.4 106.7 108.0 28.4
 SER-217   LYS-218  1.9 1.9 2.4 -18.7 93.8 102.6 32.0
 LYS-218   GLY-219  4.8 5.1 10.7 1.0 62.4 49.9 23.9
 GLY-219   TYR-220  7.2 7.7 11.0 -10.5 66.3 66.6 0.8
 TYR-220   GLY-221  10.3 10.6 -1.9 4.1 67.7 70.4 -23.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees