Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-115   ILE-116  2.7 3.1 -12.9 -7.0 43.5 49.4 42.1
 ILE-116   VAL-117  1.8 1.5 11.4 -5.2 108.7 111.4 16.7
 VAL-117   ASP-118  2.0 3.2 3.8 2.4 54.7 52.4 1.7
 ASP-118   ARG-119  3.4 4.1 -10.3 1.4 97.5 92.4 -14.9
 ARG-119   ILE-120  3.8 3.0 35.2 -50.1 139.8 141.6 18.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-156   LYS-157  11.6 11.5 11.4 -4.1 55.2 62.3 4.2
 LYS-157   ASP-158  10.6 9.9 -7.0 30.8 88.0 74.4 -19.5
 ASP-158   ASP-159  6.9 6.5 -50.1 31.8 25.1 28.8 30.9
 ASP-159   GLN-160  6.8 7.0 -97.7 95.5 82.2 89.8 27.7
 GLN-160   GLU-161  6.5 8.3 -15.6 -12.1 83.1 77.1 16.5
 GLU-161   GLU-162  5.4 7.7 19.2 -11.9 39.8 42.5 6.4
 GLU-162   THR-163  5.5 8.4 9.6 -5.4 67.6 62.6 -2.5
 THR-163   VAL-164  2.5 5.2 -11.4 6.1 51.6 54.6 3.9
 VAL-164   ARG-165  0.6 3.1 -19.2 6.0 94.4 88.9 -1.5
 ARG-165   LYS-166  3.8 5.9 23.4 -18.0 39.6 32.5 8.5
 LYS-166   ARG-167  3.5 5.8 -6.9 6.4 78.3 94.2 9.4
 ARG-167   LEU-168  3.4 3.2 2.9 -6.9 122.3 122.3 6.8
 LEU-168   VAL-169  5.7 5.6 3.0 -5.6 61.1 69.4 -14.5
 VAL-169   GLU-170  8.1 8.8 9.5 -2.3 60.0 42.8 -3.2
 GLU-170   TYR-171  8.4 7.9 -1.0 -10.7 48.9 72.4 9.5
 TYR-171   HIS-172  9.6 8.6 6.2 -9.6 98.4 108.7 -3.4
 HIS-172   GLN-173  11.9 11.4 -2.8 13.4 138.6 131.6 8.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees