Oligopeptide-Binding Protein Oppa

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-297   GLN-298  5.3 5.6 12.6 -3.5 56.6 56.2 228.9
 GLN-298   ALA-299  4.1 4.2 -11.1 7.9 96.4 96.0 51.1
 ALA-299   MET-300  0.3 0.5 4.5 -1.8 15.3 18.3 23.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-361   PRO-362  4.4 4.3 4.3 4.4 43.1 39.0 -77.0
 PRO-362   PRO-363  3.8 3.8 -5.0 -2.3 84.3 81.9 19.7
 PRO-363   ILE-364  5.6 5.5 8.2 -1.8 88.4 86.9 -75.1
 ILE-364   PHE-365  4.3 4.0 -4.8 3.2 22.6 24.0 137.4
 PHE-365   LYS-366  3.8 3.7 3.9 0.6 118.6 111.3 3.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-517   TYR-518  7.5 8.1 7.0 -2.6 104.2 109.6 -88.6
 TYR-518   ARG-519  4.1 4.8 -8.0 6.0 141.2 135.5 53.0
 ARG-519   LYS-520  2.4 2.6 -0.9 10.5 128.2 130.5 23.4
 LYS-520   ALA-521  4.6 5.1 4.1 -10.0 111.7 108.8 24.8
 ALA-521   ALA-522  5.5 5.8 -5.2 3.7 93.6 93.0 24.9
 ALA-522   PHE-523  3.3 3.3 2.6 -2.1 20.6 24.8 16.6
 PHE-523   VAL-524  3.5 3.6 1.5 0.1 81.8 79.8 -55.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-542   LEU-543  5.4 5.3 -17.1 7.2 98.6 101.3 174.0
 LEU-543   ASN-544  4.0 4.2 -12.8 22.2 135.7 139.5 135.1
 ASN-544   TYR-545  1.0 1.3 3.2 -10.6 41.5 33.7 -208.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees