Nucleoside-Diphosphate Kinase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TRP-45
ILE-46
8.9
8.9
3.3
-3.3
101.4
102.4
1.4
ILE-46
ASP-47
5.8
5.7
2.2
0.9
39.7
41.0
33.7
ASP-47
ARG-48
6.6
6.5
-1.3
-2.9
84.6
86.3
-14.6
ARG-48
GLU-49
5.7
5.5
0.0
2.1
144.5
143.7
-37.4
GLU-49
LEU-50
8.1
8.0
-3.5
2.2
34.8
35.8
24.0
LEU-50
ALA-51
5.9
5.7
0.5
0.5
84.7
83.2
22.6
ALA-51
GLU-52
2.9
2.7
0.1
-1.6
100.3
99.9
10.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-69
TYR-70
1.4
1.4
-1.7
3.8
105.8
106.3
19.4
TYR-70
ILE-71
4.1
4.2
-3.2
2.0
137.4
137.8
-18.3
ILE-71
THR-72
3.2
3.3
-1.1
1.3
80.6
80.7
6.2
THR-72
LYS-73
3.2
3.2
-0.9
0.1
36.6
36.8
15.6
LYS-73
THR-74
5.0
5.1
0.6
-2.2
85.7
86.1
-1.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees