DNA Polymerase Kappa
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-404
THR-405
14.7
15.3
-7.6
29.1
61.8
59.6
-7.0
THR-405
HIS-406
16.8
17.4
11.0
-18.1
55.4
70.4
0.0
HIS-406
LEU-407
15.6
15.2
14.1
35.6
77.7
84.2
-0.2
LEU-407
THR-408
12.2
11.5
4.7
-6.5
22.9
27.0
0.9
THR-408
ARG-409
10.7
9.8
-7.5
-44.4
90.1
100.0
-1.1
ARG-413
LYS-414
1.8
2.5
26.3
-3.5
50.9
60.0
11.1
LYS-414
SER-415
4.4
4.2
2.9
-16.0
85.2
79.3
3.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees