Protein (Dna Topoisomerase I)
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-251
LYS-252
9.0
9.3
-11.0
12.2
28.8
32.6
-20.0
LYS-252
ALA-253
8.6
8.7
-7.9
16.0
73.6
80.9
-14.6
ALA-253
GLU-254
6.9
7.0
-18.0
16.4
130.5
126.9
81.6
GLU-254
GLU-255
4.8
4.9
-6.3
2.7
107.7
106.8
23.2
GLU-254
GLU-255
4.8
4.9
-6.3
2.7
107.7
106.8
23.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-254
GLU-255
4.8
4.9
-6.3
2.7
107.7
106.8
23.2
GLU-254
GLU-255
4.8
4.9
-6.3
2.7
107.7
106.8
23.2
GLU-255
VAL-256
4.2
4.0
4.4
-2.9
43.6
40.7
2.9
VAL-256
ALA-257
2.4
2.4
-3.2
0.9
72.5
71.7
62.0
ALA-257
THR-258
2.1
2.1
6.9
-1.4
116.1
117.5
-50.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-259
PHE-260
3.5
3.4
-6.5
5.5
101.8
99.8
-31.4
PHE-260
ALA-261
4.3
4.3
-9.2
7.2
41.5
36.1
55.4
ALA-261
LYS-262
5.7
5.4
9.1
-4.4
96.3
100.4
76.9
LYS-262
MET-263
7.5
7.0
-17.7
8.0
136.6
126.6
-101.7
MET-263
LEU-264
9.1
9.1
-8.1
29.7
91.1
89.5
-114.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-279
LYS-280
6.4
6.2
9.7
0.9
63.9
60.9
124.5
LYS-280
ASP-281
6.7
6.6
-0.9
3.0
71.1
69.9
-61.5
ASP-281
TRP-282
4.6
4.7
-1.4
-1.5
18.9
21.8
48.8
TRP-282
ARG-283
5.3
5.4
5.0
-3.0
90.7
95.2
10.0
ARG-283
LYS-284
9.0
9.1
5.9
0.0
74.9
78.8
-52.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-289
GLU-290
17.4
17.9
5.0
-0.3
88.9
95.7
-29.7
GLU-290
LYS-291
14.0
14.3
-11.4
11.5
150.7
150.3
-17.6
LYS-291
ASN-292
14.6
14.5
-2.6
8.7
91.3
92.5
-3.0
ASN-292
ILE-293
18.0
17.8
3.4
-6.5
120.4
117.3
-82.8
ILE-293
ILE-294
16.8
16.8
21.7
-15.8
69.6
74.9
-42.1
ILE-294
THR-295
13.6
13.7
8.6
22.8
10.8
8.6
563.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-299
CYS-300
15.2
14.8
5.3
0.5
51.8
46.2
39.3
CYS-300
ASP-301
11.6
11.3
1.9
3.5
56.0
55.0
70.3
ASP-301
PHE-302
11.0
10.7
-2.1
1.3
106.3
105.1
-22.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-306
GLN-307
7.6
7.9
-5.2
9.7
42.3
32.8
-57.6
GLN-307
TYR-308
9.2
9.2
-11.2
10.8
61.2
66.2
36.1
TYR-308
PHE-309
6.4
6.3
-13.4
10.7
113.2
108.9
81.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
HIS-367
PRO-368
9.0
9.5
11.8
-3.8
77.7
85.8
20.0
PRO-368
LYS-369
6.1
6.3
-5.7
0.1
127.7
129.5
-119.0
LYS-369
MET-370
4.0
4.2
14.8
-0.9
18.4
18.9
197.5
MET-370
GLY-371
6.1
6.3
-12.2
6.3
50.9
49.2
8.6
MET-370
GLY-371
6.1
6.3
-12.2
6.3
50.9
49.2
8.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
MET-370
GLY-371
6.1
6.3
-12.2
6.3
50.9
49.2
8.6
MET-370
GLY-371
6.1
6.3
-12.2
6.3
50.9
49.2
8.6
GLY-371
MET-372
4.2
4.3
-6.8
10.6
93.5
90.2
80.2
MET-372
LEU-373
1.5
1.6
-4.1
-0.8
47.8
46.6
75.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-418
ASN-419
12.9
12.5
-12.1
19.1
67.7
65.1
14.7
ASN-419
ILE-420
10.1
9.8
-10.2
0.0
62.6
59.5
1.4
ILE-420
GLN-421
7.0
6.6
4.3
-13.0
164.8
159.0
203.1
GLN-421
GLY-422
8.6
8.4
25.6
-24.7
116.1
116.7
-78.3
GLY-422
SER-423
11.3
11.0
-5.8
16.7
70.5
76.4
-115.6
SER-423
ILE-424
13.9
13.5
-12.5
1.7
131.7
125.1
-88.8
ILE-424
LYS-425
17.4
17.1
-7.0
6.9
125.2
127.7
39.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees