Benzoylformate Decarboxylase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-492   GLN-493  6.2 6.2 1.1 -3.8 54.5 54.0 -113.8
 GLN-493   ALA-494  7.7 7.7 -0.8 4.3 133.0 133.0 263.3
 ALA-494   LEU-495  5.5 5.4 -3.2 -1.7 139.4 140.2 -241.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-496   ALA-497  5.4 5.4 -2.4 -3.1 16.8 14.3 604.3
 ALA-497   ASP-498  4.8 4.8 0.9 -0.9 114.8 114.0 137.5
 ASP-498   ASN-499  6.7 6.7 1.2 -1.5 175.6 176.1 -62.6
 ASN-499   LEU-500  6.2 6.1 -2.7 2.9 80.2 80.0 -47.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-510   LEU-511  10.9 10.9 1.5 0.3 97.6 97.7 132.9
 LEU-511   SER-512  13.7 13.7 -7.9 14.1 114.0 116.3 473.2
 SER-512   ALA-513  16.3 16.4 -12.9 0.1 170.3 174.8 -891.6
 ALA-513   LYS-514  14.9 14.8 -5.7 2.2 126.2 120.9 58.8
 LYS-514   GLY-515  16.5 16.5 -13.7 23.5 127.2 130.8 394.7
 GLY-515   PRO-516  13.5 13.4 -3.9 -2.4 56.3 55.0 29.3
 PRO-516   VAL-517  10.5 10.5 1.1 3.1 110.3 109.7 88.8
 VAL-517   LEU-518  7.8 7.9 -1.9 -0.4 70.8 71.9 -100.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-519   GLU-520  2.9 2.9 4.3 -2.7 80.6 79.7 -109.6
 GLU-520   VAL-521  1.4 1.3 -3.2 2.7 162.2 162.2 49.7
 VAL-521   SER-522  1.9 1.8 1.2 -0.3 77.3 78.3 160.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees