Lysine-Specific Histone Demethylase 1
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-420
LYS-421
4.4
4.5
-0.9
2.4
88.9
92.4
62.3
LYS-421
HIS-422
4.8
5.3
3.5
-5.6
34.6
34.8
-9.1
HIS-422
VAL-423
3.8
4.3
-1.3
7.8
87.9
85.7
-19.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-513
ASN-514
16.4
16.1
6.7
10.2
115.4
110.2
-133.3
ASN-514
PRO-515
12.9
12.4
7.8
-2.6
55.6
49.0
31.6
PRO-515
PRO-516
10.7
10.2
-4.7
6.8
77.1
70.7
22.1
PRO-516
SER-517
7.1
6.5
5.1
-6.3
41.2
49.3
-11.4
SER-517
ASP-518
6.5
5.8
-4.9
4.6
154.2
162.6
19.4
ASP-518
VAL-519
6.6
6.3
-5.0
7.1
113.5
118.2
37.7
VAL-519
TYR-520
5.3
5.3
0.0
-4.8
135.6
136.0
32.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees