Atp-Dependent RNA Helicase Dob1
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-319
ASN-320
10.1
10.7
-23.1
12.3
63.3
59.9
-16.9
ASN-320
PHE-321
8.5
8.9
-14.6
17.3
41.5
36.2
6.4
PHE-321
ARG-322
8.1
8.9
11.7
-27.2
102.3
105.9
-2.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-503
THR-504
15.0
14.3
81.4
-1.0
122.0
122.9
-291.1
THR-504
PHE-505
14.6
14.7
-165.6
44.4
96.5
116.7
-118.8
PHE-505
SER-506
14.1
13.8
-155.7
-19.1
29.6
95.7
866.0
SER-506
ILE-507
15.0
10.1
-12.7
163.7
52.7
58.7
-284.7
ILE-507
GLY-508
11.4
10.4
79.1
-109.8
84.0
102.0
1044.2
ILE-507
GLY-508
11.4
10.4
79.1
-109.8
84.0
102.0
1044.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-507
GLY-508
11.4
10.4
79.1
-109.8
84.0
102.0
1044.2
ILE-507
GLY-508
11.4
10.4
79.1
-109.8
84.0
102.0
1044.2
PRO-512
ALA-513
12.4
11.6
-115.1
12.2
72.9
22.8
397.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-576
ASP-577
7.8
8.6
-9.4
-23.3
29.4
30.6
173.1
ASP-577
ARG-578
9.3
8.8
-5.5
-16.6
46.1
37.6
84.4
ARG-578
LEU-579
9.6
9.1
4.7
-7.3
123.3
123.5
-61.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-582
PHE-583
8.3
8.5
2.2
11.7
20.1
25.2
79.2
PHE-583
HIS-584
7.3
7.3
-12.7
10.6
122.5
123.6
13.1
HIS-584
LEU-585
9.7
9.8
7.5
-0.7
42.9
45.9
30.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-588
MET-589
12.5
12.5
-69.3
74.7
104.7
83.8
14.8
MET-589
ILE-590
8.8
8.8
-10.5
1.8
41.2
27.4
39.4
ILE-590
LEU-591
8.0
8.4
-0.6
-7.5
40.0
43.2
23.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-592
LEU-593
8.4
9.2
-6.6
-3.2
96.1
109.1
5.6
LEU-593
MET-594
4.7
5.4
15.2
-5.9
7.2
4.5
26.9
MET-594
ARG-595
5.4
6.3
10.4
-5.6
68.4
67.4
13.0
ARG-595
VAL-596
7.7
8.9
36.3
-21.9
97.2
90.2
-8.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-881
LEU-882
14.8
14.8
-6.2
1.6
125.9
129.3
-3.2
LEU-882
ARG-883
11.6
11.9
17.3
-11.1
23.4
28.3
36.7
ARG-883
ARG-884
13.5
13.9
8.8
1.4
86.2
90.3
12.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees