DNA Damage-Binding Protein 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-392   GLY-393  1.1 0.7 -11.6 -18.2 19.4 20.8 15.6
 GLY-393   ILE-394  1.1 1.0 3.7 -27.5 127.3 130.1 34.6
 ILE-394   GLY-395  2.0 2.2 -3.4 -5.4 54.0 63.2 16.8
 GLY-395   ILE-396  3.2 3.0 -15.8 1.4 19.6 10.3 17.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-702   THR-703  5.0 4.5 -36.7 48.7 70.2 82.0 4.9
 THR-703   ILE-704  4.9 5.8 -11.0 -50.0 11.3 24.7 81.6
 ILE-704   ASP-705  4.4 4.6 -10.0 26.4 55.2 50.0 -4.5
 ASP-705   GLU-706  6.3 6.7 19.5 -63.9 126.6 99.2 30.5
 GLU-706   ILE-707  8.7 8.7 -149.1 -29.7 18.5 35.6 70.7
 ILE-707   GLN-708  8.2 8.3 62.5 25.3 101.4 133.2 -76.0
 GLN-708   LYS-709  4.9 5.4 1.0 -6.8 126.1 138.3 -0.2
 LYS-709   LEU-710  4.6 5.7 17.4 -11.6 110.9 113.8 5.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees