Preprotein Translocase Seca Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 MET-390   THR-391  15.0 15.5 -10.6 -15.8 122.8 118.1 -41.9
 THR-391   GLY-392  12.0 12.5 -22.1 0.5 68.9 84.9 10.5
 GLY-392   THR-393  8.3 8.7 -159.4 -84.0 130.6 156.3 364.5
 THR-393   ALA-394  5.3 8.6 118.6 -108.1 32.4 55.3 51.6
 ALA-394   ASP-395  5.1 10.7 9.6 -95.3 30.5 61.3 -206.3
 ASP-395   THR-396  6.9 9.9 73.2 -122.0 12.1 6.2 -197.2
 THR-396   GLU-397  6.1 8.5 -26.0 25.1 122.6 122.7 3.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ARG-416   PRO-417  4.5 3.7 -7.8 4.4 154.2 150.4 -11.5
 PRO-417   MET-418  6.2 5.0 9.1 -3.3 67.8 76.1 6.4
 MET-418   ILE-419  4.4 3.3 -7.0 21.1 100.8 97.1 33.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ILE-502   ALA-503  21.1 21.6 -8.6 -1.1 79.9 82.1 29.4
 ALA-503   THR-504  19.8 20.2 -8.5 28.9 14.7 23.6 -71.9
 THR-504   ASN-505  20.3 20.1 13.8 -76.2 96.5 76.4 20.3
 ASN-505   MET-506  17.6 17.0 -84.7 -45.2 147.7 112.3 558.1
 MET-506   ALA-507  16.1 19.4 -128.0 16.5 80.6 152.1 -203.5
 ALA-507   GLY-508  15.8 20.5 -125.3 158.9 127.6 140.7 51.3
 GLY-508   ARG-509  15.8 19.2 -91.3 -117.6 142.4 92.3 -350.4
 ARG-509   GLY-510  12.6 17.3 160.8 24.7 57.4 37.1 720.8
 GLY-510   THR-511  13.5 16.8 -127.5 -73.8 163.3 153.9 -714.4
 THR-511   ASP-512  15.0 16.3 -3.6 -5.8 101.9 93.7 -7.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-630   GLN-631  2.7 4.1 -7.5 4.9 112.9 125.1 18.3
 GLN-631   ARG-632  3.5 4.7 0.2 -7.3 90.4 92.3 31.6
 ARG-632   LYS-633  2.3 2.7 10.9 -10.6 154.5 147.6 -17.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees