Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  4.1 4.5 -0.1 -0.9 53.2 51.7 1.4
 LEU-109   GLY-110  1.6 2.4 -1.7 23.3 125.5 130.2 63.6
 GLY-110   ILE-111  3.6 3.8 -9.5 -1.5 54.4 52.0 21.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-215   ASP-216  8.5 8.8 -3.2 -2.1 41.6 39.0 29.2
 ASP-216   SER-217  5.7 5.8 -4.2 -3.4 105.5 107.0 -1.6
 SER-217   LYS-218  2.1 2.1 -7.7 -15.8 84.0 71.3 52.1
 LYS-218   GLY-219  4.0 3.9 25.4 -14.4 63.5 48.6 26.3
 GLY-219   TYR-220  6.2 6.4 13.5 -2.2 68.3 76.0 6.8
 TYR-220   GLY-221  9.3 9.7 3.1 7.0 113.9 114.8 -4.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees