Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-108   LEU-109  3.8 3.2 2.4 2.2 134.4 137.7 -1.5
 LEU-109   GLY-110  1.3 0.5 -4.8 30.0 119.1 117.8 65.1
 GLY-110   ILE-111  4.1 4.0 -7.1 -2.3 45.4 47.9 3.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-217   LYS-218  3.9 3.9 -2.6 -9.5 74.5 63.5 45.1
 LYS-218   GLY-219  1.2 1.8 1.8 29.1 73.1 69.3 49.8
 GLY-219   TYR-220  3.1 3.5 5.4 1.4 81.2 68.0 -22.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees