Nodulation Fucosyltransferase Nodz

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-159   ALA-160  3.9 3.9 7.1 -1.0 66.4 65.6 121.2
 ALA-160   LEU-161  5.2 5.1 -0.3 -4.6 51.3 50.4 -28.2
 LEU-161   TYR-162  6.1 6.1 2.4 -0.3 139.2 137.9 56.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-241   VAL-242  12.6 12.7 1.6 4.0 149.9 148.2 -124.7
 VAL-242   PRO-243  10.3 10.4 -3.8 7.7 54.6 52.6 29.4
 PRO-243   LYS-244  12.4 12.5 -8.5 101.9 77.6 80.9 -565.8
 SER-256   ALA-257  21.3 21.4 -32.7 -14.0 120.1 122.2 -707.2
 ALA-257   GLU-258  20.1 20.0 12.7 -10.1 85.4 84.3 -12.7
 GLU-258   MET-259  16.5 16.5 7.6 -1.1 44.2 44.0 238.7
 MET-259   GLY-260  17.0 17.3 0.6 6.4 22.5 31.6 90.1
 GLY-260   ILE-261  17.9 18.0 -19.4 12.2 102.1 101.2 -158.2
 ILE-261   GLU-262  14.8 14.8 -7.4 -1.8 98.8 104.3 -177.0
 GLU-262   GLY-263  12.8 12.8 -0.3 1.2 156.5 156.0 -45.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-264   ALA-265  13.2 13.2 -1.1 -0.3 91.4 90.8 102.8
 ALA-265   SER-266  9.7 9.7 -5.8 -8.1 62.7 63.5 495.6
 SER-266   ALA-267  9.8 9.6 10.2 0.7 175.5 174.3 -463.4
 ALA-267   LEU-268  10.6 10.6 2.2 -2.4 107.8 108.4 -68.5
 LEU-268   ILE-269  7.9 7.9 7.5 -10.7 86.3 84.7 129.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-272   LEU-273  2.9 2.8 2.0 0.2 94.0 95.3 18.2
 LEU-273   LEU-274  2.8 2.8 -2.9 1.5 23.8 21.8 22.9
 LEU-274   ALA-275  4.4 4.4 -0.6 -2.9 53.4 54.5 37.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-288   PHE-289  12.3 12.4 -8.2 -6.7 37.6 40.8 357.6
 PHE-289   THR-290  10.9 10.8 5.7 -1.8 74.4 77.3 -68.1
 THR-290   ARG-291  8.0 7.9 -2.9 5.9 129.7 129.5 73.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-296   VAL-297  2.5 2.7 7.6 -6.8 101.1 100.2 69.5
 VAL-297   PRO-298  2.5 2.4 5.7 -14.0 155.6 153.9 292.1
 PRO-298   ARG-299  5.1 5.0 8.0 2.1 130.3 128.2 -228.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees