DNA Helicase Uvsw

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-29   SER-30  5.7 5.9 6.5 6.3 46.8 42.6 68.8
 SER-30   PHE-31  6.0 6.3 -4.1 1.9 150.6 146.6 -3.1
 PHE-31   GLU-32  5.6 5.5 -2.4 0.8 132.9 136.1 -18.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-51   ARG-52  6.1 6.2 9.1 -10.6 29.8 29.8 -34.1
 ARG-52   LEU-53  6.4 6.2 15.2 -6.0 56.7 56.7 69.3
 LEU-53   LEU-54  3.3 3.4 4.3 6.3 15.7 13.4 73.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-263   ASP-264  9.3 9.4 17.2 -40.3 112.7 115.9 72.7
 ASP-264   GLY-265  11.0 10.1 35.9 8.0 70.8 46.4 106.0
 GLY-265   LYS-266  9.8 9.1 6.5 -51.4 82.5 92.9 -10.5
 LYS-266   ALA-267  6.0 5.6 5.4 -16.1 140.9 161.4 56.1
 ALA-267   ASN-268  4.5 4.8 21.5 10.5 141.9 130.3 -172.1
 ASN-268   ILE-269  2.2 2.6 6.6 -18.3 121.9 121.2 18.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees