Guanylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-33   GLN-34  4.2 4.1 -0.1 0.3 72.3 76.3 -9.1
 GLN-34   VAL-35  1.4 1.1 7.9 -12.8 143.4 141.6 22.2
 VAL-35   SER-36  1.3 1.7 -9.5 -12.2 44.3 49.2 42.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-84   SER-85  2.2 1.9 -9.8 11.2 107.4 104.9 10.6
 SER-85   ARG-86  5.4 5.0 -1.3 -7.6 74.7 69.9 22.0
 ARG-86   GLU-87  6.9 6.3 7.4 -4.1 134.2 137.0 7.7
 GLU-87   ALA-88  9.8 9.3 0.9 -8.9 157.4 164.9 20.8
 ALA-88   ILE-89  7.9 7.6 10.5 0.0 117.0 104.2 -17.4
 ILE-89   GLU-90  6.2 5.9 -8.2 8.5 74.0 81.0 -20.4
 GLU-90   GLN-91  9.9 9.6 -2.1 -10.4 39.8 35.8 40.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees