Serine/threonine-Protein Kinase B-Raf

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-482   LYS-483  9.1 9.2 -4.6 -0.8 66.4 62.5 9.9
 LYS-483   MET-484  8.1 8.3 14.4 -52.5 145.0 135.4 55.1
 MET-484   LEU-485  7.1 6.8 44.4 -38.6 103.3 134.2 -9.8
 LEU-485   ASN-486  6.3 6.5 -38.2 12.3 11.9 22.9 67.3
 ASN-486   VAL-487  8.0 7.6 9.0 -26.9 111.6 136.0 21.1
 VAL-487   THR-488  5.8 5.5 13.0 -4.1 141.3 109.3 -1.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-507   THR-508  4.4 5.3 0.6 -21.1 112.9 126.3 36.6
 THR-508   HIS-509  3.8 3.6 47.3 -34.9 101.5 107.6 24.5
 HIS-509   HIS-510  1.6 1.6 -24.4 -24.7 35.9 35.9 101.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees