Transcriptional Regulator, Tetr Family

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-59   GLU-60  4.1 3.8 -3.1 8.4 116.6 119.2 10.3
 GLU-60   LYS-61  5.0 4.1 -14.5 -5.0 43.6 49.8 68.7
 LYS-61   LEU-62  6.4 5.6 22.6 -15.1 111.4 120.8 -63.9
 LEU-62   GLN-63  3.1 2.4 4.7 14.9 51.8 52.5 47.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-93   ALA-94  1.9 2.9 -2.9 2.9 150.7 147.4 -4.3
 ALA-94   SER-95  2.7 3.4 12.1 -16.9 89.9 94.2 3.1
 SER-95   HIS-96  6.0 6.2 2.2 -11.7 131.9 137.4 67.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-121   GLU-122  6.3 6.1 19.8 1.8 79.5 82.1 73.9
 GLU-122   LYS-123  8.2 8.0 10.5 -13.6 69.9 76.5 35.1
 LYS-123   SER-124  5.4 5.7 8.9 -26.0 140.2 137.3 151.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees