Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-28   ILE-29  1.3 3.9 11.5 -7.5 48.3 56.0 3.8
 ILE-29   SER-30  0.7 3.7 23.7 -18.2 63.9 62.0 -1.2
 SER-30   THR-31  3.5 1.8 27.6 2.3 51.9 56.2 46.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-59   PRO-60  10.7 10.3 -12.0 -27.1 41.7 50.0 56.6
 PRO-60   ASP-61  9.2 8.2 7.1 4.8 74.2 69.7 19.5
 ASP-61   GLU-62  5.5 4.7 8.0 -0.5 82.3 88.5 11.6
 GLU-62   VAL-63  6.7 7.3 -0.7 -10.8 151.3 142.3 -21.0
 VAL-63   THR-64  8.9 9.6 11.8 2.1 40.1 35.7 27.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees