Lysr-Type Regulatory Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-167   ARG-168  2.4 2.1 10.3 -25.4 81.7 78.4 34.6
 ARG-168   HIS-169  2.8 2.4 14.5 -37.1 124.0 108.8 96.3
 HIS-169   ARG-170  5.9 6.0 35.4 -43.8 75.1 79.3 32.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-268   PRO-269  14.8 14.6 -8.5 9.0 69.1 72.8 -16.9
 PRO-269   ASP-270  11.4 11.2 -1.1 21.0 130.1 123.9 81.2
 ASP-270   ILE-271  8.0 7.8 19.6 -8.7 68.1 42.7 36.3
 ILE-271   ALA-272  6.5 6.4 -22.8 9.7 89.1 83.5 -2.6
 ALA-272   ILE-273  3.5 4.0 -11.4 6.2 140.2 150.1 -47.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees