Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-128   ILE-129  3.5 3.1 -15.3 -6.1 95.9 86.3 -19.5
 ILE-129   THR-130  3.7 3.0 -27.2 -7.8 71.6 62.2 30.1
 THR-130   GLY-131  6.6 5.5 -20.5 40.7 132.2 116.0 41.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-166   ASP-167  13.7 10.9 60.2 -4.7 72.8 39.0 159.0
 ASP-167   ASP-168  11.4 11.1 94.9 13.0 108.2 73.5 63.2
 ASP-168   ASN-169  8.6 7.8 69.6 -18.6 40.2 65.7 260.8
 ASN-169   ALA-170  7.0 7.3 -112.1 -5.5 108.7 86.6 -66.7
 ALA-170   ASP-171  3.6 3.8 21.7 -3.0 55.6 56.7 26.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees