Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-140   VAL-141  13.1 12.6 -27.5 29.6 68.8 79.2 -81.7
 VAL-141   ASP-142  10.6 10.2 4.9 1.6 80.8 80.7 13.3
 ASP-142   GLY-143  7.0 6.6 -7.1 4.0 48.5 42.3 31.2
 GLY-143   VAL-144  5.6 5.4 12.7 -17.7 150.1 150.6 -7.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-161   THR-162  2.0 1.8 -1.1 -4.1 107.3 110.3 22.8
 THR-162   THR-163  4.8 4.5 -1.3 -0.7 98.9 101.1 1.2
 THR-163   GLN-164  7.2 7.0 -4.4 7.5 148.1 145.5 -3.6
 GLN-164   ASP-165  5.6 5.4 -11.2 -0.2 79.4 74.8 -45.8
 ASP-165   LEU-166  3.0 2.9 5.7 -6.5 114.4 119.1 26.4
 LEU-166   ARG-167  6.1 5.9 7.1 3.3 50.7 51.9 100.0
 ARG-167   LYS-168  8.5 8.3 11.6 -19.1 65.2 68.7 -1.8
 LYS-168   ILE-169  7.1 8.0 -18.5 -90.3 51.4 43.7 624.5
 GLU-182   LEU-183  16.2 16.0 4.1 162.3 93.0 106.1 -229.9
 LEU-183   LEU-184  13.3 12.8 7.1 -12.9 69.8 68.1 -20.7
 LEU-184   ASP-185  13.7 13.6 1.9 -4.3 29.9 30.8 5.8
 ASP-185   PRO-186  16.3 16.1 8.0 -1.6 48.3 43.4 16.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees