Luciferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-432   PHE-433  36.7 36.6 -0.5 -0.8 127.3 125.5 -43.2
 PHE-433   ILE-434  34.4 34.3 3.9 -0.6 95.4 95.3 19.8
 ILE-434   VAL-435  30.8 30.6 14.7 -59.4 26.0 27.1 -1047.3
 LEU-441   ILE-442  22.8 23.0 -3.9 20.2 108.4 109.4 68.0
 ILE-442   LYS-443  19.8 19.9 -1.7 3.0 166.8 167.8 22.7
 LYS-443   TYR-444  20.7 20.7 1.2 0.1 54.5 57.7 23.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-446   TYR-447  22.7 22.5 13.0 -13.8 68.6 71.7 42.7
 TYR-447   GLN-448  21.6 21.5 -0.7 22.1 176.3 170.1 507.2
 GLN-448   VAL-449  22.5 22.5 -8.2 11.0 111.4 108.3 207.2
 VAL-449   ALA-450  20.9 20.2 -20.0 -0.4 173.2 167.7 -598.9
 ALA-450   PRO-451  21.7 21.5 -12.3 2.6 115.6 117.9 -136.7
 PRO-451   ALA-452  18.7 18.5 -0.8 3.1 116.7 119.3 167.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees