Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  6.2 6.3 -13.6 0.9 45.3 42.4 36.7
 THR-107   LEU-108  3.5 4.2 -20.1 19.3 118.8 116.8 -12.4
 LEU-108   GLY-109  0.9 1.8 -19.5 2.4 42.5 47.6 40.0
 GLY-109   ILE-110  3.8 4.2 -1.1 16.1 114.3 122.6 18.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  9.3 9.5 -6.1 18.7 135.6 137.1 43.1
 ASP-212   SER-213  5.9 6.1 19.0 -22.7 117.9 109.5 1.6
 SER-213   LYS-214  2.9 2.9 4.3 3.9 77.8 79.0 24.7
 LYS-214   GLY-215  0.9 0.9 -29.7 22.5 41.3 47.5 17.5
 GLY-215   TYR-216  3.9 4.2 -18.8 12.3 75.4 71.0 31.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees