Geranylgeranyl Diphosphate Synthetase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-204
GLY-205
3.6
3.7
-6.8
7.3
48.0
44.1
-7.9
GLY-205
THR-206
2.2
1.7
-4.4
-0.8
19.1
20.5
22.6
THR-206
ALA-207
2.0
2.3
-4.4
1.3
80.5
79.2
19.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-215
ASN-216
13.9
13.9
-3.8
5.7
142.1
143.7
14.4
ASN-216
LEU-217
13.0
13.1
-10.9
8.6
144.8
143.5
-8.3
LEU-217
GLU-218
13.7
13.5
9.8
-28.8
97.0
94.7
0.8
GLU-218
GLY-219
17.0
16.9
-171.5
13.4
93.8
76.7
164.9
GLY-219
GLY-220
20.2
18.4
-29.1
168.1
35.8
133.6
-156.7
GLY-220
GLU-221
20.8
20.0
175.1
-67.8
89.1
67.0
107.3
GLU-221
ALA-222
21.4
18.3
-96.9
15.6
99.0
108.3
-83.8
ALA-222
TYR-223
18.9
15.0
-113.4
-3.8
49.2
144.9
14.6
TYR-223
GLY-224
18.0
15.6
16.5
168.5
75.4
104.9
-227.9
GLY-224
LYS-225
15.6
16.1
-31.4
-48.8
156.7
117.0
-247.0
LYS-225
GLU-226
15.5
18.6
-46.6
108.3
119.4
128.0
337.7
GLU-226
ARG-227
16.9
18.6
-88.8
113.6
94.4
98.2
96.4
ARG-227
ALA-228
16.1
14.9
-102.9
168.8
143.5
38.4
-5.6
ALA-228
GLY-229
13.2
13.9
159.2
165.2
78.6
121.5
193.0
GLY-229
ASP-230
12.2
12.0
-154.7
11.5
94.8
96.9
-59.4
ASP-230
LEU-231
8.5
8.7
-14.9
2.4
156.4
151.2
-53.2
LEU-231
TYR-232
8.6
8.8
-5.8
3.6
129.5
135.3
-4.3
TYR-232
GLU-233
10.4
9.8
0.2
0.7
97.9
99.2
21.5
GLU-233
GLY-234
8.9
7.9
2.1
-9.9
85.9
94.6
9.0
GLY-234
LYS-235
5.2
4.5
-2.2
33.2
28.9
27.6
-136.0
LYS-235
ARG-236
4.4
4.1
-2.2
-0.6
79.7
80.0
-4.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-259
ALA-260
2.5
2.6
17.9
-5.8
71.0
70.2
-8.6
ALA-260
LEU-261
2.7
2.0
-0.6
4.3
111.8
107.1
-8.3
LEU-261
PRO-262
5.6
5.2
6.6
-5.4
134.6
138.7
-3.2
PRO-262
ARG-263
8.9
8.4
-0.2
-5.5
88.4
78.9
10.4
ARG-263
GLU-264
10.9
10.3
10.1
-7.4
36.9
47.7
8.6
GLU-264
ALA-265
13.3
13.1
5.3
-3.0
36.7
32.6
6.2
ALA-265
LYS-266
10.4
10.6
-3.3
-0.1
79.6
82.4
-7.4
LYS-266
PRO-267
9.2
9.6
0.3
-4.6
65.4
75.2
-34.7
PRO-267
GLU-268
11.2
12.1
3.8
1.0
134.6
140.1
-20.4
GLU-268
ALA-269
14.2
14.8
-3.8
1.3
88.5
92.7
6.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-293
LEU-294
12.2
12.7
-3.9
2.3
67.2
63.4
7.4
LEU-294
GLN-295
8.5
9.0
-3.3
0.0
32.3
41.0
11.4
GLN-295
ALA-296
8.4
8.8
-1.8
-3.4
40.1
33.0
24.7
ALA-296
GLU-297
11.0
11.5
-3.8
0.5
74.1
65.4
7.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees