Glycosyl Transferase, Group 1 Family Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-304   GLY-305  7.2 7.3 -5.5 36.7 33.8 38.3 -244.2
 GLY-305   TYR-306  6.9 6.6 -29.2 -10.6 55.0 40.4 235.9
 TYR-306   SER-307  5.0 5.2 -2.3 -11.1 68.4 57.6 111.8
 SER-307   GLU-308  5.9 6.0 13.7 -18.7 170.5 160.2 54.7
 GLU-308   THR-309  7.4 6.7 53.2 -24.4 104.1 107.4 9.4
 THR-309   ILE-310  7.5 8.1 6.4 -2.0 109.1 95.0 -40.3
 ILE-310   ASP-311  11.3 11.9 -1.4 0.0 27.0 26.2 -14.7
 ASP-311   THR-312  13.0 13.9 16.3 -27.9 82.3 80.1 -99.1
 THR-312   PRO-313  16.5 17.2 7.0 -19.3 85.8 84.5 -45.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-407   PHE-408  6.5 5.8 161.6 -111.8 19.2 34.9 336.2
 PHE-408   SER-409  5.4 5.1 173.1 -164.8 66.2 73.7 -158.5
 SER-409   LEU-410  8.5 8.6 -15.1 1.5 177.0 175.7 -65.9
 LEU-410   ALA-411  9.2 9.5 -5.3 0.3 106.2 110.0 -35.4
 ALA-411   LEU-412  12.3 12.4 8.3 6.8 99.5 99.8 -27.7
 ALA-411   LEU-412  12.3 12.4 8.3 6.8 99.5 99.8 -27.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-411   LEU-412  12.3 12.4 8.3 6.8 99.5 99.8 -27.7
 ALA-411   LEU-412  12.3 12.4 8.3 6.8 99.5 99.8 -27.7
 LEU-412   LEU-413  10.9 10.6 -11.1 -9.0 35.0 25.7 120.5
 LEU-413   GLU-414  8.2 8.2 3.7 8.1 142.1 137.2 -55.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-477   GLN-478  6.6 6.5 6.6 2.3 49.2 55.1 4.0
 GLN-478   GLN-479  5.0 4.7 -11.0 -0.9 68.3 60.0 10.1
 GLN-479   TYR-480  4.2 4.2 8.8 -11.8 104.4 112.6 10.2
 TYR-480   SER-481  1.0 1.2 -5.5 -1.5 142.2 142.0 -23.3
 SER-481   LYS-482  1.0 1.3 5.9 -2.5 94.8 94.3 28.5
 LYS-482   ALA-483  4.4 4.3 -6.8 14.5 99.1 99.1 -31.8
 ALA-483   SER-484  4.5 4.3 -10.7 2.0 40.2 36.8 1.0
 SER-484   LEU-485  4.4 4.2 -0.6 -4.4 50.8 49.0 34.8
 LEU-485   ILE-486  5.6 5.5 1.9 0.1 70.4 67.2 -17.1
 ILE-486   LYS-487  8.6 8.5 10.2 -3.7 100.0 97.7 25.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees