Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-85   GLY-86  7.1 6.9 9.3 -19.8 113.2 111.6 13.3
 GLY-86   PRO-87  3.4 3.2 26.1 -18.1 84.0 94.5 -0.8
 PRO-87   GLU-88  3.8 4.1 -67.2 24.3 40.4 41.7 155.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-177   ASN-178  11.3 11.8 -34.0 19.5 102.3 101.9 -1.4
 ASN-178   LEU-179  8.7 9.1 -23.7 17.7 112.9 106.9 -8.7
 LEU-179   PRO-180  9.6 10.0 -6.2 15.7 128.5 121.8 -27.6
 PRO-180   GLY-181  7.8 8.2 171.7 137.9 81.5 87.8 12.8
 GLY-181   CYS-182  10.7 9.6 48.2 -25.4 149.4 133.4 -2.8
 CYS-182   ASP-183  11.0 11.2 0.3 -5.5 127.9 141.1 17.7
 ASP-183   VAL-184  10.6 11.0 -13.0 4.4 31.1 33.4 44.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-188   VAL-189  4.0 3.3 2.0 10.0 109.4 125.8 -0.9
 VAL-189   SER-190  1.4 1.5 -37.8 16.7 58.4 54.2 58.6
 SER-190   ALA-191  2.2 2.5 6.2 -1.5 156.5 158.0 -25.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees