Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-85   GLY-86  7.3 7.2 -4.2 -13.7 67.9 68.6 21.3
 GLY-86   PRO-87  3.5 3.4 16.6 0.4 80.8 96.7 -3.4
 PRO-87   GLU-88  3.3 3.6 -76.4 44.3 42.7 49.3 104.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-177   ASN-178  11.2 11.6 -21.8 9.4 104.9 103.7 -2.5
 ASN-178   LEU-179  8.7 9.1 -19.7 12.5 111.3 106.8 -5.2
 LEU-179   PRO-180  9.5 10.0 -4.1 12.9 131.2 122.8 -28.9
 PRO-180   GLY-181  7.9 8.3 164.4 167.3 81.3 86.2 22.3
 GLY-181   CYS-182  10.7 9.7 -25.9 39.7 31.5 32.0 10.5
 CYS-182   ASP-183  10.8 11.1 -0.6 -7.3 55.4 49.4 21.7
 ASP-183   VAL-184  10.3 10.3 -10.7 14.4 28.8 27.4 -8.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-188   VAL-189  4.0 3.5 5.9 1.2 109.3 120.4 7.8
 VAL-189   SER-190  2.0 1.8 -34.6 15.7 55.2 51.7 40.7
 SER-190   ALA-191  1.4 1.8 0.8 -3.9 154.2 151.4 10.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees