Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-531   PRO-532  7.6 7.8 -0.7 3.6 155.4 159.7 34.7
 PRO-532   PHE-533  5.5 5.7 -9.3 18.3 146.0 145.6 -7.0
 PHE-533   MET-534  6.6 6.8 -2.3 1.4 132.8 131.0 15.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-762   GLY-763  4.9 5.0 -4.9 3.3 58.8 53.7 70.8
 GLY-763   TYR-764  2.1 2.3 12.9 -8.0 96.1 96.2 17.1
 TYR-764   GLY-765  1.8 1.9 -0.8 1.4 113.6 113.0 48.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees