Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-710   LEU-711  20.4 20.4 -18.6 19.9 105.9 106.7 -0.9
 LEU-711   ASP-712  17.1 17.2 -10.0 14.9 59.8 58.3 2.8
 ASP-712   THR-713  14.2 14.2 7.3 -9.5 67.0 59.0 -19.2
 THR-713   LYS-714  10.9 11.1 12.5 -10.0 120.9 112.4 0.2
 LYS-714   GLY-715  8.7 8.2 -25.1 7.4 78.0 72.7 14.5
 GLY-715   PRO-716  5.8 5.4 2.6 -3.5 82.2 94.4 1.4
 PRO-716   GLU-717  2.1 1.9 -85.6 31.8 45.5 37.8 113.4
 GLU-717   ILE-718  2.8 2.6 5.5 20.4 82.3 78.6 -7.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-814   VAL-815  10.7 9.8 6.5 -28.3 145.7 133.9 53.6
 VAL-815   ASP-816  8.0 6.9 -7.5 -2.9 26.6 46.6 -13.3
 ASP-816   LEU-817  8.5 7.1 20.9 -5.8 123.1 120.3 31.0
 LEU-817   PRO-818  4.9 3.5 1.4 -17.9 113.2 113.7 25.6
 PRO-818   ALA-819  5.0 3.6 -14.5 3.1 124.4 112.2 -19.6
 ALA-819   VAL-820  6.9 6.0 -0.1 -8.4 83.0 66.6 -11.8
 VAL-820   SER-821  5.8 5.8 -43.2 22.6 65.3 55.1 36.8
 SER-821   GLU-822  3.3 3.4 -13.5 -4.7 27.7 32.4 34.2
 GLU-822   LYS-823  4.3 4.5 7.8 -4.5 78.2 76.4 -6.9
 LYS-823   ASP-824  7.5 7.3 -5.0 7.5 102.7 114.0 -8.7
 ASP-824   ILE-825  8.0 7.6 -0.9 2.6 38.9 43.9 -5.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees