Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  6.8 6.8 2.5 18.3 40.3 44.0 67.7
 THR-107   LEU-108  4.3 4.0 21.6 -12.4 117.7 117.2 -33.5
 LEU-108   GLY-109  1.2 0.2 -7.0 21.7 131.1 138.5 52.2
 GLY-109   ILE-110  3.3 3.1 -5.8 0.6 57.9 63.5 -7.4
 ILE-110   SER-111  6.7 6.6 -2.9 -3.6 73.7 73.4 33.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-211   ASP-212  8.6 8.5 9.1 -11.9 137.4 132.5 19.7
 ASP-212   SER-213  5.3 5.0 -5.5 6.4 110.2 117.7 -0.3
 SER-213   LYS-214  2.0 1.9 -19.3 11.3 78.8 78.6 21.9
 LYS-214   GLY-215  1.8 1.9 30.0 -13.2 45.7 40.5 70.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-250   TRP-251  5.9 5.9 12.4 -7.8 86.8 85.1 -3.4
 TRP-251   ARG-252  3.0 2.7 2.7 -84.1 135.9 137.8 253.1
 ARG-252   GLY-253  4.7 3.9 -114.2 -89.0 41.0 31.3 -669.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees